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the question is, are molecules unobservably small for
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what Newton called "Vulgar eyes"?
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Is there no way we can see
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something and measure it if it's that small?
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So consider water.
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A cubic centimeter of water is 1/18th of a mole,
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since the molecular weight is eighteen.
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That means it's 6/18 times
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10^23 molecules, in a cc of water.
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Now that's a really, really big number
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and it sounds like they must be just impossibly small,
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hopeless to try to see such a thing.